STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yohCannotation not available (195 aa)    
Predicted Functional Partners:
yohD
annotation not available
  
  
 0.927
ycgB
Spovr family stationary phase protein; To B.subtilis SpoVR
   
  
 0.843
yegP
DUF1508 domain-containing protein YegP; Belongs to the UPF0339 family. Duplicated subfamily
   
  
 0.816
uspB
Putative universal stress (ethanol tolerance) protein b; Belongs to the universal stress protein B family
   
  
 0.752
ymdF
Conserved protein ymdf; Belongs to the con-10 family
  
  
 0.731
ybaA
annotation not available
   
  
 0.678
rsd
Stationary phase protein, binds sigma 70 rna polymerase subunit; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
  
    0.652
ydcU
Putative spermidine/putrescine transport system permease protein; Probably part of the ABC transporter complex YdcSTUV. Probably responsible for the translocation of the substrate across the membrane
   
  
 0.619
yjdN
Protein PhnB; Putative enzyme; Not classified
  
    0.602
yciG
Uncharacterized protein; Belongs to the con-10 family
  
    0.577
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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