STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejAPutative oligopeptide abc transporter periplasmic binding protein; To H.influenzae HbpA (604 aa)    
Predicted Functional Partners:
yejB
Putative oligopeptide abc transporter membrane subunit yejb; Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane
 
 
 0.999
yejE
Putative oligopeptide abc transporter membrane subunit yeje; Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane
 
 
 0.999
yejF
Putative oligopeptide abc transporter atp binding subunit; Uncharacterized ABC transporter ATP-binding protein YejF; Putative ATP-binding component of a transport system
 
 
 0.999
gsiC
Glutathione abc transporter membrane subunit gsic; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane
 
 
 
 0.867
gsiD
Glutathione abc transporter membrane subunit gsid; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane
   
 
 0.840
yeiR
Zn-stimulated gtpase involved in zinc homeostasis; Involved in metal homeostasis. Has GTPase activity. Binds several Zn(2+) ions in vitro
 
     0.787
yeiP
Belongs to the elongation factor P family
      0.759
rtn
Putative c-di-gmp phosphodiesterase pden; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG
  
    0.759
oppA
Oligopeptide abc transporter periplasmic binding protein; This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity
     
 0.736
dppA
Dipeptide/heme abc transporter periplasmic binding protein; Dipeptide-binding protein of a transport system that can be subject to osmotic shock. DppA is also required for peptide chemotaxis
     
 0.662
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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