STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdQCPS-53 (KpLE1) prophage; protein YfdQ; Uncharacterized protein YfdQ; Phage or Prophage Related (274 aa)    
Predicted Functional Partners:
yfdR
CPS-53 (KpLE1) prophage; 5'-deoxynucleotidase; Uncharacterized protein YfdR; Phage or Prophage Related
 
  
 0.984
yfdP
CPS-53 (KpLE1) prophage; protein YfdP; To phage T4 y06Q
 
   
 0.961
yfdT
CPS-53 (KpLE1) prophage; protein YfdT; Uncharacterized protein YfdT; Phage or Prophage Related
     
 0.951
yfdS
Uncharacterized protein YfdS; Phage or Prophage Related; To the N-terminal region of phage HK97/HK620 Gp37/hpaH
  
  
 0.944
ymfL
E14 prophage; uncharacterized protein YmfL; Uncharacterized protein YmfL; Phage or Prophage Related
  
   
 0.894
yggL
Uncharacterized protein; To H.influenzae HI_0341
      
 0.828
ydiJ
Putative fad-linked oxidoreductase; Uncharacterized protein YdiJ; Putative oxidase
      
 0.822
yjgA
UPF0307 protein YjgA; Putative alpha helix protein; Protein involved in ATP-binding cassette (ABC) transporter activity
      
 0.676
yfbR
5'-deoxynucleotidase; Essential component of the deoxycytidine triphosphate (dCTP) pathway for de novo synthesis of thymidylate. Catalyzes the strictly specific dephosphorylation of 2'-deoxyribonucleoside 5'-monophosphates (dAMP, dGMP, dTMP, dUMP, dIMP and dCMP) and does not dephosphorylate 5'-ribonucleotides or ribonucleoside 3'-monophosphates
     
 0.637
ydfR
Qin prophage; protein ydfr; Uncharacterized protein YdfR; Phage or Prophage Related
      
 0.601
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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