node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ffh | rimM | b2610 | b2608 | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | 0.883 |
ffh | trmD | b2610 | b2607 | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | 0.928 |
ffh | yfjD | b2610 | b4461 | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | UPF0053 inner membrane protein YfjD; Putative membrane protein | 0.717 |
ffh | ypjD | b2610 | b2611 | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | annotation not available | 0.742 |
nudI | ttdB | b2251 | b3062 | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | L(+)-tartrate dehydratase beta subunit; L-tartrate dehydratase, subunit B; Protein involved in fermentation | 0.487 |
nudI | ttdT | b2251 | b3063 | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | L-tartrate:succinate antiporter; Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation | 0.586 |
nudI | yfaZ | b2251 | b2250 | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | annotation not available | 0.771 |
nudI | ygdH | b2251 | b2795 | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | Pyrimidine/purine-5'-nucleotide nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of diverse pyrimidine and purine nucleotide 5'-monophosphates, to form ribose 5- phosphate and the corresponding free base. Can use AMP, GMP, IMP, CMP, dTMP and UMP as substrates. Cannot catalyze the reverse reactions. Is required for optimal growth in glucose minimal medium, possibly because it contributes to nucleoside pool homeostasis by degrading excess nucleotides and feeding back the ribose moiety to catabolism | 0.580 |
nudI | ypjD | b2251 | b2611 | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | annotation not available | 0.608 |
rimM | ffh | b2608 | b2610 | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | 0.883 |
rimM | trmD | b2608 | b2607 | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | 0.999 |
rimM | yfjD | b2608 | b4461 | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | UPF0053 inner membrane protein YfjD; Putative membrane protein | 0.500 |
rimM | ypjD | b2608 | b2611 | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | annotation not available | 0.703 |
trmD | ffh | b2607 | b2610 | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | Signal recognition particle (srp) component with 4.5s rna (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...] | 0.928 |
trmD | rimM | b2607 | b2608 | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | One of at least 4 proteins (Era, RbfA, RimM and RsgA/YjeQ) that assist in the late assembly stage of the 30S ribosomal subunit. An accessory protein needed during the final step in assembly of the 30S ribosomal subunit, for assembly of the head region (the 16S rRNA 3' domain) It may act while Era is associated and before RimP in 30S subunit assembly . Interacts with S19 . Essential for efficient processing of 16S rRNA; a deletion mutant accumulates 17S rRNA . Deletions also do not assemble the head-associated ribosomal proteins correctly . May be needed both before and after RbfA durin [...] | 0.999 |
trmD | yfjD | b2607 | b4461 | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | UPF0053 inner membrane protein YfjD; Putative membrane protein | 0.485 |
trmD | ypjD | b2607 | b2611 | Trna m(1)g37 methyltransferase, sam-dependent; Specifically methylates guanosine-37 in various tRNAs | annotation not available | 0.626 |
ttdB | nudI | b3062 | b2251 | L(+)-tartrate dehydratase beta subunit; L-tartrate dehydratase, subunit B; Protein involved in fermentation | Pyrimidine deoxynucleotide diphosphatase nudi; Catalyzes the hydrolysis of nucleoside triphosphates, with a preference for pyrimidine deoxynucleoside triphosphates (dUTP, dTTP and dCTP) | 0.487 |
ttdB | ttdT | b3062 | b3063 | L(+)-tartrate dehydratase beta subunit; L-tartrate dehydratase, subunit B; Protein involved in fermentation | L-tartrate:succinate antiporter; Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation | 0.968 |
ttdB | yfaZ | b3062 | b2250 | L(+)-tartrate dehydratase beta subunit; L-tartrate dehydratase, subunit B; Protein involved in fermentation | annotation not available | 0.590 |