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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfjPCP4-57 prophage; putative GTP-binding protein YfjP; To E.coli YkfA and YeeP (287 aa)    
Predicted Functional Partners:
yfjQ
UPF0380 protein YfjQ; Phage or Prophage Related; Belongs to the UPF0380 family
 
    0.909
yfjR
CP4-57 prophage; putative DNA-binding transcriptional regulator; Uncharacterized HTH-type transcriptional regulator YfjR; Phage or Prophage Related
 
     0.849
yjgN
annotation not available
      
 0.790
yfjX
CP4-57 prophage; putative antirestriction protein; Belongs to the antirestriction protein family
  
     0.777
yafX
Uncharacterized protein YafX; Phage or Prophage Related; Belongs to the antirestriction protein family
  
     0.775
yfjZ
CP4-57 prophage; putative antitoxin of the YpjF-YfjZ toxin-antitoxin system; Antitoxin component of a type IV toxin-antitoxin (TA) system. Antitoxin that counteracts the effect of cognate toxin YpjF . Also counteracts the effect of non-cognate toxins CbtA and YfkI
  
     0.775
yafW
Cytoskeleton bundling-enhancing protein cbea and related proteins; Antitoxin component of a type IV toxin-antitoxin (TA) system. Antitoxin that counteracts the effect of cognate toxin YkfI . It does not seem to bind to the cognate toxin but instead induces toxin loss by an unknown mechanism . Co-overexpression of toxin YkfI and antitoxin YafW leads to formation of elongated cells
  
     0.774
ypjF
CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system; Toxic component of a type IV toxin-antitoxin (TA) system . Acts as a dual toxin inhibitor that blocks cell division and cell elongation in genetically separable interactions with FtsZ and MreB . Overexpression results in inhibition of growth in liquid cultures . Overexpression leads to formation of lemon-shaped cells; inactivated by overexpression of cognate antitoxin YfjZ but not when the 2 genes are coexpressed from the same plasmid . Also neutralized by overexpression of non-cognate antitoxins YafW and CbeA
  
     0.774
ykfI
CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system; Toxic component of a type IV toxin-antitoxin (TA) system . Acts as a toxin inhibitor that blocks cell division and cell elongation via FtsZ and possibly also MreB (although no interaction with MreB has been proven) . Overexpression results in inhibition of growth in liquid cultures and a decrease in colony formation These effects are overcome by concomitant expression of cognate antitoxin YafW, which leads to toxin loss by an unknown mechanism . Overexpression leads to formation of lemon-shaped cells and cell lysis; inactiv [...]
  
     0.773
yafZ
CP4-6 prophage; conserved protein YafZ; Belongs to the UPF0380 family
 
     0.770
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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