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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypjKUncharacterized protein YpjK; Phage or Prophage Related; To E.coli YkfL (78 aa)    
Predicted Functional Partners:
yfjS
CP4-57 prophage; inner membrane lipoprotein YfjS; Does not induce degP when overexpressed unless it is mutated to resemble YafY
       0.846
yahE
annotation not available
      
 0.826
insA7
KpLE2 phage-like element; IS1 repressor protein InsA; Absolutely required for transposition of IS1
      
 0.813
yfjT
Uncharacterized protein YfjT; Phage or Prophage Related; To E.coli YkfB
       0.770
yahL
annotation not available
      
 0.732
yfjR
CP4-57 prophage; putative DNA-binding transcriptional regulator; Uncharacterized HTH-type transcriptional regulator YfjR; Phage or Prophage Related
       0.707
uvrD
Ssdna translocase and dsdna helicase - dna helicase ii; A helicase with DNA-dependent ATPase activity . Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand. Initiates unwinding more efficiently from a nicked substrate than ds duplex DNA . Involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair, and probably also in repair of alkylated DNA (Probable)
      
 0.416
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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