STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygcQPutative flavoprotein; May play a role in a redox process (286 aa)    
Predicted Functional Partners:
ygcR
Putative flavoprotein; May play a role in a redox process
 
 0.991
fixA
Anaerobic carnitine reduction putative electron transfer flavoprotein subunit; Required for anaerobic carnitine reduction. May bring reductant to CaiA
 
 0.931
ydiQ
Putative electron transfer flavoprotein subunit ydiq; May play a role in a redox process
 
 0.927
yijE
Eama-like transporter family protein; Involved in response to cystine. Overexpression confers tolerance to excess cystine
      
 0.889
hofM
Dna catabolic putative pilus assembly protein; Required for the use of extracellular DNA as a nutrient
      
 0.877
yidE
Putative transport protein yide; Putative transport protein
      
 0.846
ygcS
Putative mfs sugar transporter; Inner membrane metabolite transport protein YgcS; Putative transport protein
       0.845
ydiO
Putative acyl-coa dehydrogenase; Belongs to the acyl-CoA dehydrogenase family
 
 
 0.787
caiA
Crotonobetaine reductase subunit ii, fad-binding; Catalyzes the reduction of crotonobetainyl-CoA to gamma- butyrobetainyl-CoA . The electron donor could be the FixA/FixB complex
 
 
 0.758
ridA
Enamine/imine deaminase, reaction intermediate detoxification; Accelerates the release of ammonia from reactive enamine/imine intermediates of the PLP-dependent threonine dehydratase (IlvA) in the low water environment of the cell. It catalyzes the deamination of enamine/imine intermediates to yield 2-ketobutyrate and ammonia. It is required for the detoxification of reactive intermediates of IlvA due to their highly nucleophilic abilities. Involved in the isoleucine biosynthesis (By similarity)
   
  
 0.721
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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