Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
alaS | ygeG | b2697 | b2851 | alanyl-tRNA synthetase; Catalyzes the attachment of L-alanine to tRNA(Ala) in a two- step reaction: L-alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). AlaRS also incorrectly activates the sterically smaller amino acid glycine as well as the sterically larger amino acid L-serine; generates 2-fold more mischarged Gly than Ser. These mischarged amino acids occur because the of inherent physicochemical limitations on discrimination between closely related amino acids (Ala, Gly and Ser) in the charging step. Attaches Ala to transfer-me [...] | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.619 |
htpG | ygeG | b0473 | b2851 | Protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; Molecular chaperone. Has ATPase activity. | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.670 |
yaiV | ygeG | b0375 | b2851 | Putative transcriptional regulator; Involved in oxidative stress resistance; Belongs to the IprA family. | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.764 |
ybeT | ybeU | b0647 | b0648 | Sel1 family TPR-like repeat protein. | DUF1266 family protein; Putative tRNA ligase; To E.coli YbeR. | 0.934 |
ybeT | ygeG | b0647 | b2851 | Sel1 family TPR-like repeat protein. | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.770 |
ybeU | ybeT | b0648 | b0647 | DUF1266 family protein; Putative tRNA ligase; To E.coli YbeR. | Sel1 family TPR-like repeat protein. | 0.934 |
ybeU | ygeG | b0648 | b2851 | DUF1266 family protein; Putative tRNA ligase; To E.coli YbeR. | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.734 |
ygeG | alaS | b2851 | b2697 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | alanyl-tRNA synthetase; Catalyzes the attachment of L-alanine to tRNA(Ala) in a two- step reaction: L-alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). AlaRS also incorrectly activates the sterically smaller amino acid glycine as well as the sterically larger amino acid L-serine; generates 2-fold more mischarged Gly than Ser. These mischarged amino acids occur because the of inherent physicochemical limitations on discrimination between closely related amino acids (Ala, Gly and Ser) in the charging step. Attaches Ala to transfer-me [...] | 0.619 |
ygeG | htpG | b2851 | b0473 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; Molecular chaperone. Has ATPase activity. | 0.670 |
ygeG | yaiV | b2851 | b0375 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Putative transcriptional regulator; Involved in oxidative stress resistance; Belongs to the IprA family. | 0.764 |
ygeG | ybeT | b2851 | b0647 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Sel1 family TPR-like repeat protein. | 0.770 |
ygeG | ybeU | b2851 | b0648 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | DUF1266 family protein; Putative tRNA ligase; To E.coli YbeR. | 0.734 |
ygeG | ygeH | b2851 | b2852 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Putative transcriptional regulator; Putative invasion protein. | 0.888 |
ygeG | ygeI | b2851 | b2853 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Uncharacterized protein. | 0.722 |
ygeG | yhaC | b2851 | b3121 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Pentapetide repeats-related protein. | 0.673 |
ygeG | yjgL | b2851 | b4253 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | SopA-central-domain-like hexapeptide repeat protein. | 0.627 |
ygeG | yqeK | b2851 | b2849 | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | Uncharacterized protein. | 0.844 |
ygeH | ygeG | b2852 | b2851 | Putative transcriptional regulator; Putative invasion protein. | Uncharacterized protein YgeG; Pseudogene; Belongs to the LcrH/SycD chaperone family. | 0.888 |
ygeH | ygeI | b2852 | b2853 | Putative transcriptional regulator; Putative invasion protein. | Uncharacterized protein. | 0.847 |
ygeH | yhaC | b2852 | b3121 | Putative transcriptional regulator; Putative invasion protein. | Pentapetide repeats-related protein. | 0.540 |
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