Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| feaR | glcC | b1384 | b2980 | Arac family transcriptional regulator, positive regulator of tyna and feab; Positive regulator of tynA/maoA and feaB/padA, the genes for 2-phenylethylamine catabolism | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | 0.602 |
| feaR | hcaR | b1384 | b2537 | Arac family transcriptional regulator, positive regulator of tyna and feab; Positive regulator of tynA/maoA and feaB/padA, the genes for 2-phenylethylamine catabolism | Lysr family transcriptional regulator, hca operon transcriptional activator; Transcriptional activator of the hca operon for 3- phenylpropionic acid catabolism | 0.722 |
| feaR | mhpR | b1384 | b0346 | Arac family transcriptional regulator, positive regulator of tyna and feab; Positive regulator of tynA/maoA and feaB/padA, the genes for 2-phenylethylamine catabolism | Iclr family transcriptional regulator, mhp operon transcriptional activator; Activator of the mhpABCDFE operon coding for components of the 3-hydroxyphenylpropionate degradation pathway | 0.652 |
| glcA | glcB | b2975 | b2976 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | 0.900 |
| glcA | glcC | b2975 | b2980 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | 0.863 |
| glcA | glcD | b2975 | b2979 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Glycolate dehydrogenase, putative fad-linked subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.944 |
| glcA | glcE | b2975 | b4468 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Glycolate dehydrogenase, putative fad-binding subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.536 |
| glcA | glcF | b2975 | b4467 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Glycolate oxidase iron-sulfur subunit; Enzyme; Central intermediary metabolism: Pool, multipurpose conversions | 0.787 |
| glcA | glcG | b2975 | b2977 | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | Putative heme-binding protein glcg; Belongs to the GlcG family | 0.922 |
| glcB | glcA | b2976 | b2975 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | 0.900 |
| glcB | glcC | b2976 | b2980 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | 0.945 |
| glcB | glcD | b2976 | b2979 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Glycolate dehydrogenase, putative fad-linked subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.997 |
| glcB | glcE | b2976 | b4468 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Glycolate dehydrogenase, putative fad-binding subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.993 |
| glcB | glcF | b2976 | b4467 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Glycolate oxidase iron-sulfur subunit; Enzyme; Central intermediary metabolism: Pool, multipurpose conversions | 0.995 |
| glcB | glcG | b2976 | b2977 | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | Putative heme-binding protein glcg; Belongs to the GlcG family | 0.994 |
| glcC | feaR | b2980 | b1384 | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | Arac family transcriptional regulator, positive regulator of tyna and feab; Positive regulator of tynA/maoA and feaB/padA, the genes for 2-phenylethylamine catabolism | 0.602 |
| glcC | glcA | b2980 | b2975 | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | Glycolate/lactate:h(+) symporter glca; Transports glycolate across the membrane. Can also transport L-lactate and D-lactate. Seems to be driven by a proton motive force | 0.863 |
| glcC | glcB | b2980 | b2976 | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | Malate synthase g; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA | 0.945 |
| glcC | glcD | b2980 | b2979 | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | Glycolate dehydrogenase, putative fad-linked subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.938 |
| glcC | glcE | b2980 | b4468 | Gntr family transcriptional regulator, glc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity Also negatively regulates the transcription of its own gene . Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector | Glycolate dehydrogenase, putative fad-binding subunit; Component of a complex that catalyzes the oxidation of glycolate to glyoxylate . Is required for E.coli to grow on glycolate as a sole source of carbon . Is also able to oxidize D-lactate ((R)-lactate) with a similar rate . Does not link directly to O(2), and 2,6-dichloroindophenol (DCIP) and phenazine methosulfate (PMS) can act as artificial electron acceptors in vitro, but the physiological molecule that functions as primary electron acceptor during glycolate oxidation is unknown | 0.860 |
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