STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiWannotation not available (130 aa)    
Predicted Functional Partners:
ygiV
Transcriptional repressor for mcbr biofilm gene; Represses expression of mcbR
  
  
 0.891
qseC
Quorum sensing sensory histidine kinase in two-component regulatory system with qseb; Member of a two-component regulatory system QseB/QseC. Activates the flagella regulon by activating transcription of FlhDC. May activate QseB by phosphorylation
 
  
 0.862
qseB
Quorum sensing dna-binding response regulator in two-component regulatory system with qsec; Member of a two-component regulatory system QseB/QseC. Activates the flagella regulon by activating transcription of FlhDC. Currently it is not known whether this effect is direct or not
  
  
 0.831
elaB
Putative membrane-anchored duf883 family ribosome-binding protein; Belongs to the ElaB/YgaM/YqjD family
  
  
 0.762
yqjD
Ribosome- and membrane-associated duf883 domain-containing protein yqjd; Upon overexpression inhibits growth
   
  
 0.741
yodD
annotation not available
   
  
 0.714
yqjC
annotation not available
  
  
 0.694
yccJ
annotation not available
  
    0.663
sfsA
Putative dna-binding transcriptional regulator of maltose metabolism; Binds to DNA non-specifically. Could be a regulatory factor involved in maltose metabolism
   
  
 0.621
yceJ
Putative cytochrome b561; Belongs to the cytochrome b561 family
      
 0.605
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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