Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aspS | tldD | b1866 | b3244 | aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Also mischarges tRNA(Asp) with D-aspartate, although it is a poor substrate ; Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | 0.412 |
mcbA | pmbA | b0806 | b4235 | Colanic acid mucoidy stimulation protein; Affects biofilm formation and mucoidy. | Putative antibiotic peptide MccB17 maturation peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). | 0.803 |
mcbA | tldD | b0806 | b3244 | Colanic acid mucoidy stimulation protein; Affects biofilm formation and mucoidy. | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | 0.478 |
pmbA | mcbA | b4235 | b0806 | Putative antibiotic peptide MccB17 maturation peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). | Colanic acid mucoidy stimulation protein; Affects biofilm formation and mucoidy. | 0.803 |
pmbA | tldD | b4235 | b3244 | Putative antibiotic peptide MccB17 maturation peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | 0.981 |
pqqL | tldD | b1494 | b3244 | Putative periplasmic M16 family zinc metalloendopeptidase; Putative zinc protease. | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | 0.520 |
tldD | aspS | b3244 | b1866 | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Also mischarges tRNA(Asp) with D-aspartate, although it is a poor substrate ; Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.412 |
tldD | mcbA | b3244 | b0806 | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | Colanic acid mucoidy stimulation protein; Affects biofilm formation and mucoidy. | 0.478 |
tldD | pmbA | b3244 | b4235 | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | Putative antibiotic peptide MccB17 maturation peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). | 0.981 |
tldD | pqqL | b3244 | b1494 | Putative peptidase; Metalloprotease involved in CcdA degradation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA). Belongs to the peptidase U62 family. | Putative periplasmic M16 family zinc metalloendopeptidase; Putative zinc protease. | 0.520 |