STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhsARhs protein with putative toxin 55 domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell (1377 aa)    
Predicted Functional Partners:
yibA
annotation not available
 
  
 0.974
insL1
IS186/IS421 transposase; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
     0.739
b0582
IS186 transposase; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
  
     0.739
b2394
annotation not available
  
     0.739
ydfU
Qin prophage; protein ydfu; Uncharacterized protein YdfU; Phage or Prophage Related
      
 0.731
ypjA
Adhesin-like autotransporter ypja; Uncharacterized outer membrane protein YpjA; Putative ATP-binding component of a transport system
  
     0.711
yraH
Putative fimbrial-like adhesin protein; Part of the yraHIJK fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim operon
  
   
 0.711
sfmH
Putative fimbrial adhesin protein sfmh; Part of the sfmACDHF fimbrial operon. Could contribute to adhesion to various surfaces in specific environmental niches. Increases adhesion to eukaryotic T24 bladder epithelial cells in the absence of fim genes
  
     0.689
frvR
Putative transcriptional regulator frvr; Could be involved in the regulation of the transcription of the FRV operon
  
     0.671
yhhI
Putative transposase; Belongs to the transposase 11 family
  
    0.659
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.