STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaSLipopolysaccharide core biosynthesis; Protein involved in cell surface antigen activity, host-interacting and lipopolysaccharide core region biosynthetic process (311 aa)    
Predicted Functional Partners:
waaB
Adds a galactose goup to a glucose group of LPS
 
  
 0.983
waaZ
Lipopolysaccharide core biosynthesis; Protein involved in cell surface antigen activity, host-interacting and lipopolysaccharide core region biosynthetic process
 
  
 0.978
waaR
Adds the glucose(II) group on the galactose(I) group of LPS.
 
  
 0.969
waaP
Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core
  
  
 0.964
waaU
Adds the terminal N-acetyl-D-glucosamine group on the glucose(II) group of LPS
 
 
 0.961
waaO
Belongs to the glycosyltransferase 8 family
 
  
 0.959
waaQ
Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core (By similarity)
  
 
 0.958
waaY
Catalyzes the phosphorylation of heptose(II) of the outer membrane lipopolysaccharide core
 
  
 0.934
waaG
Involved in the addition of the first glucose residue to the lipopolysaccharide core
  
  
 0.898
waaL
Adds the O-antigen on the glucose group of LPS
 
  
 0.833
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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