STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidEPutative transport protein yide; Putative transport protein (553 aa)    
Predicted Functional Partners:
ygcQ
Putative flavoprotein; May play a role in a redox process
      
 0.846
yijE
Eama-like transporter family protein; Involved in response to cystine. Overexpression confers tolerance to excess cystine
      
 0.828
ycaD
Uncharacterized MFS-type transporter YcaD; Putative transport; Not classified
      
 0.767
hofM
Dna catabolic putative pilus assembly protein; Required for the use of extracellular DNA as a nutrient
      
 0.738
argO
L-lysine exporter family protein lyse/argo; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine. May also be involved in the export of canavanine (a plant-derived antimetabolite)
      
 0.676
pfo
Pyruvate-ferredoxin/flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
 
   
 0.594
rlmM
23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA. Modifies C2498 in naked 23S rRNA, but not in assembled 50S subunits or ribosomes
      
 0.587
dcuA
Anaerobic c4-dicarboxylate transporter dcua; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
 
   
 0.574
yfbS
Uncharacterized transporter YfbS; Putative transport protein
 
   
 0.537
trkG
Rac prophage; k(+) transporter trkg; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA. Requires TrkE (sapD) for maximal transport activity, low activity is seen in its absence; no further stimulation is seen with SapF . Transport in the absence of SapD is dependent on a high membrane potential and a high cytoplasmic ATP concentration, suggesting this protein may be able to interact with other ATP-binding proteins . Can transport potassium and rubidium
  
 
 0.517
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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