STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbEExtracellular polysaccharide production threonine-rich protein. (80 aa)    
Predicted Functional Partners:
yjbF
Extracellular polysaccharide production lipoprotein.
  
  
 0.968
yjbH
DUF940 family extracellular polysaccharide protein.
  
  
 0.952
yjbG
Extracellular polysaccharide export OMA protein; To E.coli YmcB.
  
    0.940
ugd
UDP-glucose 6-dehydrogenase; Protein involved in cell surface antigen activity, host-interacting, colanic acid biosynthetic process and response to desiccation.
   
  
 0.749
yiaB
YiaAB family inner membrane protein.
   
    0.661
ycfJ
Uncharacterized protein.
   
  
 0.651
ycfT
Inner membrane protein.
   
  
 0.634
rcsA
Transcriptional regulator of colanic acid capsular biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds, with RcsB, to the RcsAB box to regulate expression of genes involved in colanic acid capsule synthesis.
   
  
 0.534
yfeN
Putative outer membrane protein; Putative sugar hydrolase; Belongs to the nucleoside-specific channel-forming outer membrane porin (Tsx) (TC 1.B.10) family.
      
 0.508
yihN
MFS transporter family protein; Putative resistance protein (transport); Belongs to the major facilitator superfamily.
      
 0.508
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.