STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbGExtracellular polysaccharide export OMA protein; To E.coli YmcB. (245 aa)    
Predicted Functional Partners:
yjbF
Extracellular polysaccharide production lipoprotein.
 
  
 0.994
yjbH
DUF940 family extracellular polysaccharide protein.
    0.989
yjbE
Extracellular polysaccharide production threonine-rich protein.
  
    0.940
ycfT
Inner membrane protein.
  
    0.861
gfcD
Putative O-antigen capsule production periplasmic protein.
    0.825
ymgD
Uncharacterized protein YmgD; Pseudogene; putative ATP-binding component of a transport system.
   
  
 0.808
gfcB
O-antigen capsule production lipoprotein; Putative regulator.
     0.807
ymgG
UPF0757 family protein.
   
  
 0.804
cbrA
Colicin M resistance protein; FAD-binding protein, putative oxidoreductase; Belongs to the CbrA family.
  
  
 0.801
wcaK
Putative galactokinase; Protein involved in colanic acid biosynthetic process.
  
    0.747
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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