STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbHDUF940 family extracellular polysaccharide protein. (698 aa)    
Predicted Functional Partners:
yjbF
Extracellular polysaccharide production lipoprotein.
 
  
 0.991
yjbG
Extracellular polysaccharide export OMA protein; To E.coli YmcB.
    0.989
yjbE
Extracellular polysaccharide production threonine-rich protein.
  
  
 0.952
gfcB
O-antigen capsule production lipoprotein; Putative regulator.
   
 0.900
gfcC
Putative O-antigen capsule production periplasmic protein; To E.coli YjbG.
   
 0.864
wcaK
Putative galactokinase; Protein involved in colanic acid biosynthetic process.
 
    0.714
ugd
UDP-glucose 6-dehydrogenase; Protein involved in cell surface antigen activity, host-interacting, colanic acid biosynthetic process and response to desiccation.
  
  
 0.713
ycfT
Inner membrane protein.
  
    0.705
wcaC
Putative glycosyl transferase; Protein involved in colanic acid biosynthetic process.
  
  
 0.704
wza
Colanic acid export protein; Probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.
 
  
 0.678
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.