STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjgNDUF898 family inner membrane protein. (398 aa)    
Predicted Functional Partners:
yjgL
SopA-central-domain-like hexapeptide repeat protein.
   
  
 0.816
yfdF
Protein involved in DNA metabolic process.
   
  
 0.782
wcaC
Putative glycosyl transferase; Protein involved in colanic acid biosynthetic process.
  
     0.750
wcaK
Putative galactokinase; Protein involved in colanic acid biosynthetic process.
  
     0.745
yeiW
UPF0153 cysteine cluster protein.
      
 0.730
yegE
Putative diguanylate cyclase; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules (By similarity). Involved in the control of the switch from cell motility to adhesion via regulation of cellular levels of c-di-GMP (Probable). Part of a signaling cascade that regulates curli biosynthesis. The cascade is composed of two c-di- GMP control modules, in which c-di-GMP controlled by the DgcE/PdeH pair (module I) regulates the activity of the DgcM/PdeR pair (module II), which in turn regulates activity of the transcription factor MlrA and expression of t [...]
  
     0.692
ykgH
Putative inner membrane protein.
      
 0.683
yfjP
CP4-57 prophage; Putative GTP-binding protein; To E.coli YkfA and YeeP.
      
 0.644
yebS
Inner membrane PqiA domain protein; Component of a transport pathway that contributes to membrane integrity; Belongs to the PqiA family.
      
 0.611
yijF
DUF1287 family protein.
      
 0.604
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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