STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
b4284annotation not available (383 aa)    
Predicted Functional Partners:
b2860
Pseudogene, orgA family, part of T3SS PAI ETT2 remnant
  
  
 0.866
b1402
Pseudogene, autotransporter homolog; interrupted by IS2 and IS30
     
 0.860
b1996
CP4-44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C-terminal deletion
     
 0.860
insD1
IS2 transposase TnpB; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
     
 0.822
b3045
IS2 transposase TnpB; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
     
 0.822
b4273
annotation not available
     
 0.822
ynbC
annotation not available
      
 0.781
b3044
Pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
      
 0.738
b1403
IS2 repressor TnpA; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
      
 0.734
b1997
IS2 repressor TnpA; IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
      
 0.734
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.