STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiNannotation not available (426 aa)    
Predicted Functional Partners:
yjiM
Putative 2-hydroxyglutaryl-coa dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family
     
 0.901
yphA
annotation not available
      
 0.787
yjbT
Putative periplasmic protein; Belongs to the YjbT family
      
 0.786
ydfU
Qin prophage; protein ydfu; Uncharacterized protein YdfU; Phage or Prophage Related
      
 0.785
ydgC
annotation not available
      
 0.782
mdtM
Multidrug efflux pump/bile salt:h(+) antiporter/na(+):h(+) antiporter/k(+):h(+) antiporter; Confers resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP
  
    0.737
yciZ
annotation not available
      
 0.737
ydcA
annotation not available
      
 0.736
yahK
Broad specificity nadph-dependent aldehyde reductase, zn-containing; Catalyzes the reduction of a wide range of aldehydes into their corresponding alcohols. Has a strong preference for NADPH over NADH as the electron donor. Cannot use a ketone as substrate. Is a major source of NADPH-dependent aldehyde reductase activity in E.coli. The in vivo functions of YahK has yet to be determined
      
 0.732
ydcD
Uncharacterized protein YdcD; Pseudogene, Rhs family
      
 0.730
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.