Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gldA | yjiN | b3945 | b4336 | Glycerol dehydrogenase, NAD+ dependent; Catalyzes the NAD-dependent oxidation of glycerol to dihydroxyacetone (glycerone). Allows microorganisms to utilize glycerol as a source of carbon under anaerobic conditions. In E.coli, an important role of GldA is also likely to regulate the intracellular level of dihydroxyacetone by catalyzing the reverse reaction, i.e. the conversion of dihydroxyacetone into glycerol. Possesses a broad substrate specificity, since it is also able to oxidize 1,2-propanediol and to reduce glycolaldehyde, methylglyoxal and hydroxyacetone into ethylene glycol, lac [...] | Zinc-type alcohol dehydrogenase-like protein. | 0.654 |
mdtM | yjiM | b4337 | b4335 | Multidrug efflux system protein; Confers resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP; Belongs to the major facilitator superfamily. | Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family. | 0.441 |
mdtM | yjiN | b4337 | b4336 | Multidrug efflux system protein; Confers resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP; Belongs to the major facilitator superfamily. | Zinc-type alcohol dehydrogenase-like protein. | 0.660 |
yciZ | ydcA | b4596 | b1419 | Uncharacterized protein. | Putative periplasmic protein. | 0.782 |
yciZ | ydcD | b4596 | b1457 | Uncharacterized protein. | Uncharacterized protein YdcD; Pseudogene, Rhs family. | 0.732 |
yciZ | ydgC | b4596 | b1607 | Uncharacterized protein. | GlpM family inner membrane protein. | 0.782 |
yciZ | yjbT | b4596 | b4620 | Uncharacterized protein. | Putative periplasmic protein; Belongs to the YjbT family. | 0.811 |
yciZ | yjiM | b4596 | b4335 | Uncharacterized protein. | Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family. | 0.811 |
yciZ | yjiN | b4596 | b4336 | Uncharacterized protein. | Zinc-type alcohol dehydrogenase-like protein. | 0.737 |
yciZ | ymgI | b4596 | b4593 | Uncharacterized protein. | Uncharacterized protein. | 0.786 |
ydcA | yciZ | b1419 | b4596 | Putative periplasmic protein. | Uncharacterized protein. | 0.782 |
ydcA | ydcD | b1419 | b1457 | Putative periplasmic protein. | Uncharacterized protein YdcD; Pseudogene, Rhs family. | 0.623 |
ydcA | ydgC | b1419 | b1607 | Putative periplasmic protein. | GlpM family inner membrane protein. | 0.648 |
ydcA | yjbT | b1419 | b4620 | Putative periplasmic protein. | Putative periplasmic protein; Belongs to the YjbT family. | 0.805 |
ydcA | yjiM | b1419 | b4335 | Putative periplasmic protein. | Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family. | 0.803 |
ydcA | yjiN | b1419 | b4336 | Putative periplasmic protein. | Zinc-type alcohol dehydrogenase-like protein. | 0.626 |
ydcA | ymgI | b1419 | b4593 | Putative periplasmic protein. | Uncharacterized protein. | 0.689 |
ydcD | yciZ | b1457 | b4596 | Uncharacterized protein YdcD; Pseudogene, Rhs family. | Uncharacterized protein. | 0.732 |
ydcD | ydcA | b1457 | b1419 | Uncharacterized protein YdcD; Pseudogene, Rhs family. | Putative periplasmic protein. | 0.623 |
ydcD | ydgC | b1457 | b1607 | Uncharacterized protein YdcD; Pseudogene, Rhs family. | GlpM family inner membrane protein. | 0.623 |
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