Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
hsdM | yjiA | b4349 | b4352 | DNA methyltransferase M; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance MTase modifying the [...] | Metal-binding GTPase; Binds GTP and has low GTPase activity. May have a GTP- dependent regulatory function; Belongs to the SIMIBI class G3E GTPase family. CobW subfamily. | 0.427 |
hsdM | yjiS | b4349 | b4341 | DNA methyltransferase M; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance MTase modifying the [...] | DUF1127 family protein. | 0.490 |
yeiW | yghA | b4502 | b3003 | UPF0153 cysteine cluster protein. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.503 |
yeiW | yjhG | b4502 | b4297 | UPF0153 cysteine cluster protein. | Putative dehydratase; Catalyzes the dehydration of D-xylonic acid to form 2- dehydro-3-deoxy-D-pentonate. | 0.527 |
yeiW | yjiS | b4502 | b4341 | UPF0153 cysteine cluster protein. | DUF1127 family protein. | 0.806 |
yeiW | yphG | b4502 | b2549 | UPF0153 cysteine cluster protein. | DUF4380 domain-containing TPR repeat protein. | 0.895 |
yeiW | yphH | b4502 | b2550 | UPF0153 cysteine cluster protein. | Putative NAGC-like transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent; Belongs to the ROK (NagC/XylR) family. | 0.806 |
yghA | yeiW | b3003 | b4502 | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | UPF0153 cysteine cluster protein. | 0.503 |
yghA | yjiS | b3003 | b4341 | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | DUF1127 family protein. | 0.472 |
yghA | yphG | b3003 | b2549 | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | DUF4380 domain-containing TPR repeat protein. | 0.530 |
yjhG | yeiW | b4297 | b4502 | Putative dehydratase; Catalyzes the dehydration of D-xylonic acid to form 2- dehydro-3-deoxy-D-pentonate. | UPF0153 cysteine cluster protein. | 0.527 |
yjhG | yjiS | b4297 | b4341 | Putative dehydratase; Catalyzes the dehydration of D-xylonic acid to form 2- dehydro-3-deoxy-D-pentonate. | DUF1127 family protein. | 0.509 |
yjhG | yphG | b4297 | b2549 | Putative dehydratase; Catalyzes the dehydration of D-xylonic acid to form 2- dehydro-3-deoxy-D-pentonate. | DUF4380 domain-containing TPR repeat protein. | 0.676 |
yjhG | yphH | b4297 | b2550 | Putative dehydratase; Catalyzes the dehydration of D-xylonic acid to form 2- dehydro-3-deoxy-D-pentonate. | Putative NAGC-like transcriptional regulator; Protein involved in regulation of transcription, DNA-dependent; Belongs to the ROK (NagC/XylR) family. | 0.457 |
yjiA | hsdM | b4352 | b4349 | Metal-binding GTPase; Binds GTP and has low GTPase activity. May have a GTP- dependent regulatory function; Belongs to the SIMIBI class G3E GTPase family. CobW subfamily. | DNA methyltransferase M; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance MTase modifying the [...] | 0.427 |
yjiA | yjiS | b4352 | b4341 | Metal-binding GTPase; Binds GTP and has low GTPase activity. May have a GTP- dependent regulatory function; Belongs to the SIMIBI class G3E GTPase family. CobW subfamily. | DUF1127 family protein. | 0.903 |
yjiR | yjiS | b4340 | b4341 | Uncharacterized HTH-type transcriptional regulator YjiR; RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site; In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. | DUF1127 family protein. | 0.531 |
yjiS | hsdM | b4341 | b4349 | DUF1127 family protein. | DNA methyltransferase M; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance MTase modifying the [...] | 0.490 |
yjiS | yeiW | b4341 | b4502 | DUF1127 family protein. | UPF0153 cysteine cluster protein. | 0.806 |
yjiS | yghA | b4341 | b3003 | DUF1127 family protein. | Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.472 |
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