STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylcHDLP12 prophage; uncharacterized protein YlcH; Uncharacterized protein YlcH; Phage or Prophage Related (33 aa)    
Predicted Functional Partners:
ylcG
Uncharacterized protein YlcG; Phage or Prophage Related; To equivalent protein in phage 82
     
 0.956
ybcN
DLP12 prophage; DNA base-flipping protein; Uncharacterized protein YbcN; Phage or Prophage Related
       0.845
ninE
DLP12 prophage; NinE family prophage protein; Prophage NinE homolog; Similar to phage 82 and lambda proteins
       0.845
ybcO
DLP12 prophage; putative nuclease YbcO; Based on its fold and a conserved His residue, has been predicted to be a nuclease
       0.845
rusA
DLP12 prophage; crossover junction endodeoxyribonuclease RusA; Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of CC dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
       0.845
yniD
Uncharacterized protein YniD; Pseudogene, ankyrin repeats
      
 0.821
yohO
UPF0387 family protein YohO; Belongs to the UPF0387 family
      
 0.821
yoaI
annotation not available
      
 0.790
yqgB
Acid stress response protein yqgb; Belongs to the YqgB family
      
 0.784
ykgO
annotation not available
      
 0.738
Your Current Organism:
Escherichia coli K12 MG1655
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli K12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.