STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciZUncharacterized protein. (57 aa)    
Predicted Functional Partners:
yffR
CPZ-55 prophage; uncharacterized protein.
      
 0.901
yjiM
Putative 2-hydroxyglutaryl-CoA dehydratase; Belongs to the FldB/FldC dehydratase alpha/beta subunit family.
      
 0.811
yjbT
Putative periplasmic protein; Belongs to the YjbT family.
      
 0.811
dsrB
Uncharacterized protein.
      
 0.803
ymgI
Uncharacterized protein.
      
 0.786
ydfC
Uncharacterized protein, Qin prophage.
      
 0.783
ydcA
Putative periplasmic protein.
      
 0.782
ydgC
GlpM family inner membrane protein.
      
 0.782
yciT
Putative DEOR-type transcriptional regulator; Protein involved in transcription repressor activity and transcription.
     
 0.744
yjiN
Zinc-type alcohol dehydrogenase-like protein.
      
 0.737
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.