Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rzoR | yoaJ | b4528 | b4675 | Prophage outer membrane lipoprotein RzoR; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity). | Inner membrane-associated protein. | 0.455 |
rzoR | ythA | b4528 | b4655 | Prophage outer membrane lipoprotein RzoR; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity). | Uncharacterized protein. | 0.499 |
ycaR | yoaJ | b0917 | b4675 | Peroxide and acid resistance protein, UPF0434 family; Belongs to the UPF0434 family. | Inner membrane-associated protein. | 0.453 |
ycaR | ythA | b0917 | b4655 | Peroxide and acid resistance protein, UPF0434 family; Belongs to the UPF0434 family. | Uncharacterized protein. | 0.478 |
ydgU | ythA | b4601 | b4655 | Stationary phase-induced protein. | Uncharacterized protein. | 0.730 |
yjbB | ythA | b4020 | b4655 | Putative alpha helix protein. | Uncharacterized protein. | 0.506 |
yjhB | yjhC | b4279 | b4280 | Putative MFS transporter, membrane protein; Putative transport protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)-dependent; Putative dehydrogenase; Belongs to the Gfo/Idh/MocA family. | 0.989 |
yjhB | ythA | b4279 | b4655 | Putative MFS transporter, membrane protein; Putative transport protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | Uncharacterized protein. | 0.617 |
yjhC | yjhB | b4280 | b4279 | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)-dependent; Putative dehydrogenase; Belongs to the Gfo/Idh/MocA family. | Putative MFS transporter, membrane protein; Putative transport protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | 0.989 |
yjhC | ythA | b4280 | b4655 | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)-dependent; Putative dehydrogenase; Belongs to the Gfo/Idh/MocA family. | Uncharacterized protein. | 0.634 |
yoaJ | rzoR | b4675 | b4528 | Inner membrane-associated protein. | Prophage outer membrane lipoprotein RzoR; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity). | 0.455 |
yoaJ | ycaR | b4675 | b0917 | Inner membrane-associated protein. | Peroxide and acid resistance protein, UPF0434 family; Belongs to the UPF0434 family. | 0.453 |
yoaJ | ypdK | b4675 | b4680 | Inner membrane-associated protein. | Inner membrane protein. | 0.624 |
yoaJ | yqhH | b4675 | b3014 | Inner membrane-associated protein. | Outer membrane lipoprotein, Lpp paralog. | 0.505 |
yoaJ | ythA | b4675 | b4655 | Inner membrane-associated protein. | Uncharacterized protein. | 0.731 |
ypdK | yoaJ | b4680 | b4675 | Inner membrane protein. | Inner membrane-associated protein. | 0.624 |
ypdK | ythA | b4680 | b4655 | Inner membrane protein. | Uncharacterized protein. | 0.786 |
yqhH | yoaJ | b3014 | b4675 | Outer membrane lipoprotein, Lpp paralog. | Inner membrane-associated protein. | 0.505 |
yqhH | ythA | b3014 | b4655 | Outer membrane lipoprotein, Lpp paralog. | Uncharacterized protein. | 0.521 |
ythA | rzoR | b4655 | b4528 | Uncharacterized protein. | Prophage outer membrane lipoprotein RzoR; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity). | 0.499 |
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