TNPO1 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

TNPO1

Transportin 1. (898 aa)

Predicted Functional Partners:

TNPO2

0.998

IPO5

0.995

IPO9

0.993

KPNB1

0.992

IPO7

0.989

IPO4

0.989

IPO8

0.984

RAN

0.978

TNPO3

0.978

ENSCWAP00000028093

0.975

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000028093	IPO5	ENSCWAP00000028093	ENSCWAP00000004710	annotation not available	Importin 5.	0.991
ENSCWAP00000028093	IPO7	ENSCWAP00000028093	ENSCWAP00000002076	annotation not available	Importin 7.	0.951
ENSCWAP00000028093	IPO8	ENSCWAP00000028093	ENSCWAP00000017599	annotation not available	Importin 8.	0.951
ENSCWAP00000028093	IPO9	ENSCWAP00000028093	ENSCWAP00000012367	annotation not available	Importin 9.	0.922
ENSCWAP00000028093	KPNB1	ENSCWAP00000028093	ENSCWAP00000000897	annotation not available	Karyopherin subunit beta 1.	0.986
ENSCWAP00000028093	RAN	ENSCWAP00000028093	ENSCWAP00000005836	annotation not available	RAN, member RAS oncogene family.	0.767
ENSCWAP00000028093	TNPO1	ENSCWAP00000028093	ENSCWAP00000001672	annotation not available	Transportin 1.	0.975
ENSCWAP00000028093	TNPO2	ENSCWAP00000028093	ENSCWAP00000010846	annotation not available	Transportin 2.	0.975
ENSCWAP00000028093	TNPO3	ENSCWAP00000028093	ENSCWAP00000006513	annotation not available	Transportin 3.	0.900
IPO4	IPO5	ENSCWAP00000020292	ENSCWAP00000004710	Importin 4.	Importin 5.	0.992
IPO4	IPO7	ENSCWAP00000020292	ENSCWAP00000002076	Importin 4.	Importin 7.	0.976
IPO4	IPO8	ENSCWAP00000020292	ENSCWAP00000017599	Importin 4.	Importin 8.	0.977
IPO4	IPO9	ENSCWAP00000020292	ENSCWAP00000012367	Importin 4.	Importin 9.	0.989
IPO4	KPNB1	ENSCWAP00000020292	ENSCWAP00000000897	Importin 4.	Karyopherin subunit beta 1.	0.993
IPO4	RAN	ENSCWAP00000020292	ENSCWAP00000005836	Importin 4.	RAN, member RAS oncogene family.	0.767
IPO4	TNPO1	ENSCWAP00000020292	ENSCWAP00000001672	Importin 4.	Transportin 1.	0.989
IPO4	TNPO2	ENSCWAP00000020292	ENSCWAP00000010846	Importin 4.	Transportin 2.	0.988
IPO4	TNPO3	ENSCWAP00000020292	ENSCWAP00000006513	Importin 4.	Transportin 3.	0.925
IPO5	ENSCWAP00000028093	ENSCWAP00000004710	ENSCWAP00000028093	Importin 5.	annotation not available	0.991
IPO5	IPO4	ENSCWAP00000004710	ENSCWAP00000020292	Importin 5.	Importin 4.	0.992