STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_305Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. (307 aa)    
Predicted Functional Partners:
CFPG_468
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.996
CFPG_496
Oxaloacetate-decarboxylating NADP-dependent malate dehydrogenase.
  
 0.960
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
  
 
 0.920
CFPG_356
Aspartate aminotransferase.
  
 0.913
CFPG_438
Aspartate aminotransferase.
  
 0.913
CFPG_533
Na+-transporting methylmalonyl-CoA decarboxylase beta subunit.
     
 0.900
CFPG_312
Glutamate synthase large subunit.
  
 
 0.896
CFPG_557
Cobalamin-dependent methylmalonyl-CoA mutase large subunit.
    
 0.864
CFPG_558
Cobalamin-dependent methylmalonyl-CoA mutase large subunit.
    
 0.864
CFPG_448
Putative pyruvate-flavodoxin oxidoreductase.
  
 
 0.859
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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