STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NclLOW QUALITY PROTEIN: nucleolin. (714 aa)    
Predicted Functional Partners:
Npm1
Nucleophosmin 1.
   
 
 0.946
Eif3a
Eukaryotic translation initiation factor 3 subunit A.
   
 
 0.891
ENSCCNP00000016499
annotation not available
   
 
 0.888
Hnrnpu
Heterogeneous nuclear ribonucleoprotein U.
   
 
 0.833
Serbp1
Plasminogen activator inhibitor 1 RNA-binding protein isoform X1.
   
 
 0.765
Nop58
Nucleolar protein 58 isoform X1.
   
 0.760
Mdk
Midkine.
    
 
 0.744
Hnrnpd
LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein D0-like.
   
0.730
Pan3
PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1.
    
 0.720
Pan2
LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2.
    
 0.710
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.