STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd3Homeobox protein HoxA/B/D3. (432 aa)    
Predicted Functional Partners:
Hoxd4
Homeobox protein HoxA/B/C/D4.
  
  
0.952
Hoxa6
Homeobox protein HoxA/B/C6.
   
  
0.590
Pdzrn4
PDZ domain-containing RING finger protein 4 isoform X1.
     
 0.551
Spns2
MFS transporter, Spinster family, sphingosine-1-phosphate transporter.
   
  
 0.545
Hoxd9
LOW QUALITY PROTEIN: homeobox protein Hox-D9.
   
 
0.473
Hoxd10
Homeobox protein Hox-D10.
   
 
0.431
Pdzrn3
E3 ubiquitin-protein ligase PDZRN3.
     
 0.414
Mtx2
Metaxin-2 isoform X1.
      
 0.404
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.