STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sema6dSemaphorin-6D isoform X1. (1073 aa)    
Predicted Functional Partners:
Plxna1
Plexin-A1.
    
0.794
ENSCCNP00000012583
Plexin-A1-like.
    
 0.794
Plxna2
Plexin-A2.
    
0.668
Tmem38b
Trimeric intracellular cation channel type B.
      
 0.667
ENSCCNP00000002708
annotation not available
    
 0.617
ENSCCNP00000008854
annotation not available
    
 0.617
Plxna4
Plexin-A4.
    
 0.617
Met
Hepatocyte growth factor receptor isoform X1.
    
 0.606
Mst1r
Macrophage-stimulating protein receptor.
    
 0.606
Trem2
Triggering receptor expressed on myeloid cells 2.
     
 0.588
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.