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hda-3 protein (Neurospora crassa) - STRING interaction network
"hda-3" - Histone deacetylase RPD3 in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hda-3Histone deacetylase RPD3 (646 aa)    
Predicted Functional Partners:
cac-3
Histone acetyltransferase type B subunit 2 (446 aa)
     
  0.973
hda-4
Putative uncharacterized protein (1073 aa)
       
  0.961
EFNCRP00000002092
Putative uncharacterized protein (1486 aa)
     
  0.959
B14D6.290
Putative uncharacterized protein (366 aa)
     
  0.955
hda-1
Putative uncharacterized protein (738 aa)
   
 
0.936
hH2B
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (137 aa)
       
  0.935
EFNCRP00000000172
Putative uncharacterized protein (1369 aa)
     
 
  0.931
set-2
Histone-lysine N-methyltransferase, H3 lysine-36 specific (954 aa)
   
  0.899
29E8.260
Predicted protein (935 aa)
   
  0.895
EFNCRP00000001201
Predicted protein (650 aa)
   
  0.874
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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