STRINGSTRING
set-8 protein (Neurospora crassa) - STRING interaction network
"set-8" - Predicted protein in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
set-8Predicted protein (1442 aa)    
Predicted Functional Partners:
EFNCRP00000007912
Predicted protein (799 aa)
     
        0.788
EFNCRP00000004982
60S ribosomal protein L40 (141 aa)
         
  0.587
EFNCRP00000001073
Putative uncharacterized protein (2558 aa)
     
        0.552
amyc
Putative uncharacterized protein (1263 aa)
     
        0.535
hH2Az
Histone H2A.Z (143 aa)
       
  0.516
EFNCRP00000008119
Predicted protein (1114 aa)
     
    0.481
hH2B
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (137 aa)
       
    0.465
EFNCRP00000006173
Predicted protein (1141 aa)
     
        0.454
EFNCRP00000005980
Predicted protein (387 aa)
     
    0.453
B13C5.130
Putative uncharacterized protein (1314 aa)
     
 
    0.451
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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