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usb-1 protein (Neurospora crassa) - STRING interaction network
"usb-1" - Predicted protein in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usb-1Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (481 aa)    
Predicted Functional Partners:
B24N11.220
Putative uncharacterized protein (145 aa)
     
      0.523
EFNCRP00000008259
Pre-mRNA-splicing factor syf-1 (829 aa)
       
      0.495
EFNCRP00000005176
Putative uncharacterized protein (757 aa)
       
      0.495
H4H7.210
Putative uncharacterized protein (736 aa)
       
      0.495
B7O17.010
Putative uncharacterized protein (401 aa)
       
      0.495
EFNCRP00000002061
Pre-mRNA-splicing factor clf-1 (695 aa)
       
      0.495
EFNCRP00000000427
Pre-mRNA-splicing factor syf-2 (339 aa)
       
      0.495
EFNCRP00000000058
Cell cycle control protein cwf14 (148 aa)
       
      0.495
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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