STRINGSTRING
ubi protein (Neurospora crassa) - STRING interaction network
"ubi" - Ubiquitin in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiUbiquitin (305 aa)    
Predicted Functional Partners:
EFNCRP00000001214
40S ribosomal protein S4 (261 aa)
     
  0.986
rps-1
40S ribosomal protein S1 (256 aa)
     
  0.985
crp-5
40S ribosomal protein S26E (119 aa)
     
  0.983
EFNCRP00000009749
Putative uncharacterized protein (1933 aa)
       
  0.983
EFNCRP00000008457
40S ribosomal protein S6 (239 aa)
     
  0.980
EFNCRP00000004982
60S ribosomal protein L40 (141 aa)
     
0.978
EFNCRP00000008669
40S ribosomal protein S16 (142 aa)
     
  0.977
crp-15
40S ribosomal protein S7 (202 aa)
     
  0.976
un-16
Putative uncharacterized protein (190 aa)
     
  0.973
EFNCRP00000002377
40S ribosomal protein S13 (151 aa)
     
    0.971
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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