STRINGSTRING
cka protein (Neurospora crassa) - STRING interaction network
"cka" - Casein kinase II subunit alpha in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ckaCasein kinase II subunit alpha (327 aa)    
Predicted Functional Partners:
ckb-2
Casein kinase II subunit beta-2 (285 aa)
     
  0.997
ckb-1
Casein kinase II subunit beta-1; Plays a complex role in regulating the basal catalytic activity of the alpha subunit (333 aa)
     
  0.994
EFNCRP00000000458
FACT complex subunit pob-3 (565 aa)
     
  0.968
EFNCRP00000004253
FACT complex subunit spt-16 (1042 aa)
     
  0.954
EFNCRP00000006729
Transcription elongation factor spt-5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre- mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (1052 aa)
     
      0.910
EFNCRP00000006105
DNA topoisomerase 2 (1909 aa)
       
 
  0.907
EFNCRP00000000547
Putative uncharacterized protein (288 aa)
     
      0.906
EFNCRP00000006204
Predicted protein (489 aa)
       
      0.898
G17A4.140
Related to Pol II transcription elongation factor (601 aa)
       
      0.898
EFNCRP00000000436
Putative uncharacterized protein (1279 aa)
       
      0.898
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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