STRINGSTRING
pbd-1 protein (Neurospora crassa) - STRING interaction network
"pbd-1" - Predicted protein in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbd-1Predicted protein (1286 aa)    
Predicted Functional Partners:
B2N18.250
Related to nucleosome remodeling complex subunit RSC8 (690 aa)
     
  0.958
EFNCRP00000002555
Putative uncharacterized protein (483 aa)
     
  0.952
EFNCRP00000008192
Putative uncharacterized protein (591 aa)
     
  0.934
B13B7.230
Related to transcription factor snf5p (732 aa)
     
  0.927
EFNCRP00000007127
Putative uncharacterized protein (527 aa)
     
 
  0.866
EFNCRP00000003635
Putative uncharacterized protein (1035 aa)
     
 
  0.859
EFNCRP00000008753
Putative uncharacterized protein (751 aa)
     
  0.858
arp-4
Actin-related protein 4 (469 aa)
     
  0.824
EFNCRP00000003170
Predicted protein (836 aa)
     
  0.788
EFNCRP00000002817
Predicted protein (563 aa)
     
  0.754
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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