STRINGSTRING
spe-1 protein (Neurospora crassa) - STRING interaction network
"spe-1" - Ornithine decarboxylase in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spe-1Ornithine decarboxylase (484 aa)    
Predicted Functional Partners:
spe-3
Spermidine synthase (291 aa)
   
  0.989
aga-1
Arginase (325 aa)
       
  0.978
EFNCRP00000006237
Putative uncharacterized protein (336 aa)
       
  0.964
B13A5.050
Putative uncharacterized protein (392 aa)
       
  0.964
EFNCRP00000001315
Putative uncharacterized protein (374 aa)
       
  0.964
ota
Ornithine aminotransferase (452 aa)
       
  0.943
spe-2
Putative uncharacterized protein (503 aa)
     
 
  0.819
pyr-3
Protein pyrABCN (1832 aa)
   
 
  0.776
94C8.140
Aspartokinase (522 aa)
   
 
  0.647
hom-1
Aspartate-semialdehyde dehydrogenase (362 aa)
   
 
  0.644
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
Server load: low (8%) [HD]