STRINGSTRING
nst-4 protein (Neurospora crassa) - STRING interaction network
"nst-4" - Predicted protein in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nst-4Predicted protein (1327 aa)    
Predicted Functional Partners:
hda-4
Putative uncharacterized protein (1073 aa)
   
  0.807
hda-1
Putative uncharacterized protein (738 aa)
   
  0.763
hH2B
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (137 aa)
       
  0.681
dcl-1
Dicer-like protein 1 (1584 aa)
       
 
  0.678
set-7
Predicted protein (2140 aa)
       
  0.677
set-1
Histone-lysine N-methyltransferase, H3 lysine-4 specific (1150 aa)
     
  0.670
hH4-1
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
       
  0.668
EFNCRP00000000141
Histone H4 (103 aa)
       
  0.668
B13D24.060
Related to transcription regulator SPT7 (1172 aa)
     
  0.667
hda-2
Histone deacetylase phd1 (499 aa)
   
  0.661
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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