STRINGSTRING
29E8.520 protein (Neurospora crassa) - STRING interaction network
"29E8.520" - Related to caffeine-induced death protein 1 Cid1 in Neurospora crassa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
29E8.520Related to caffeine-induced death protein 1 Cid1 (1187 aa)    
Predicted Functional Partners:
EFNCRP00000003824
Branchpoint-bridging protein (607 aa)
     
 
  0.885
pbd-1
Predicted protein (1286 aa)
     
      0.721
EFNCRP00000001084
Putative uncharacterized protein (1294 aa)
     
 
  0.629
frh
ATP-dependent RNA helicase DOB1 (1106 aa)
     
 
  0.613
EFNCRP00000005257
Related to transcription initiation factor TFIIF large subunit (703 aa)
     
        0.596
B1D1.380
Putative uncharacterized protein (700 aa)
     
 
  0.589
B13B7.230
Related to transcription factor snf5p (732 aa)
     
        0.588
EFNCRP00000006679
Putative uncharacterized protein; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1415 aa)
     
 
  0.559
EFNCRP00000005932
Predicted protein (787 aa)
     
 
  0.537
un-17
Poly(A) polymerase (632 aa)
     
 
  0.502
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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