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hda-4 protein (Neurospora crassa) - STRING interaction network
"hda-4" - Putative uncharacterized protein in Neurospora crassa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hda-4Putative uncharacterized protein (1073 aa)    
Predicted Functional Partners:
hda-3
Histone deacetylase RPD3 (646 aa)
       
  0.961
hda-2
Histone deacetylase phd1 (499 aa)
     
  0.929
EFNCRP00000002092
Putative uncharacterized protein (1486 aa)
     
  0.901
cac-3
Histone acetyltransferase type B subunit 2 (446 aa)
     
  0.876
9G6.170
Heat shock protein 80 (705 aa)
       
  0.839
hH2B
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (137 aa)
       
  0.820
nst-4
Predicted protein (1327 aa)
   
  0.807
B8I24.120
Related to NAD-dependent histone deacetylase (670 aa)
   
  0.807
hH3
Histone H3 (136 aa)
     
  0.785
ngf-1
Histone acetyltransferase GCN5 (422 aa)
       
  0.784
Your Current Organism:
Neurospora crassa
NCBI taxonomy Id: 5141
Other names: Chrysonilia crassa, N. crassa, Neurospora, Neurospora crassa
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