STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_08527WGS project CABT00000000 data, contig 2.54; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (732 aa)    
Predicted Functional Partners:
SMAC_00512
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
  
 0.833
SMAC_01258
WGS project CABT00000000 data, contig 2.4; In the N-terminal section; belongs to the acetylglutamate kinase family.
     
 0.698
SMAC_08139
Tryptophan synthase.
     
 0.653
SMAC_04987
WGS project CABT00000000 data, contig 2.8.
   
  
 0.558
SMAC_02401
Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.474
SMAC_05990
Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.474
SMAC_03011
WGS project CABT00000000 data, contig 2.7.
   
    0.468
SMAC_08732
WGS project CABT00000000 data, contig 2.64.
     
 0.464
SMAC_06997
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.
     
 0.450
SMAC_08095
WGS project CABT00000000 data, contig 2.52.
     
 0.448
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.