STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YBB9_CIOSAOBG-type G domain-containing protein. (367 aa)    
Predicted Functional Partners:
H2YN28_CIOSA
RWD domain-containing protein.
   
 
 0.992
H2YHG3_CIOSA
Uncharacterized protein.
   
 
 0.943
H2ZRA9_CIOSA
TOG domain-containing protein.
   
 
 0.942
H2ZNM1_CIOSA
Uncharacterized protein.
   
   0.831
H2YAJ7_CIOSA
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.747
H2YKJ1_CIOSA
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
   0.705
H2Y989_CIOSA
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.669
H2Z924_CIOSA
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.665
H2Z0F7_CIOSA
Ribosomal_L18_c domain-containing protein.
   
   0.654
H2YIU9_CIOSA
Ribosomal_L2_C domain-containing protein.
   
 
 0.643
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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