H2YEB6_CIOSA protein (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2YEB6_CIOSA

Uncharacterized protein. (602 aa)

Predicted Functional Partners:

H2YID8_CIOSA

0.996

H2YIB5_CIOSA

0.980

H2Z1Q7_CIOSA

0.979

H2Z022_CIOSA

0.963

H2Z9Z1_CIOSA

0.962

H2ZMF6_CIOSA

0.960

H2Y9Z4_CIOSA

0.958

H2YYU2_CIOSA

0.956

H2YKJ1_CIOSA

0.955

H2YE41_CIOSA

0.954

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y9Z4_CIOSA	H2YEB6_CIOSA	ENSCSAVP00000002142	ENSCSAVP00000003664	Uncharacterized protein.	Uncharacterized protein.	0.958
H2Y9Z4_CIOSA	H2YID8_CIOSA	ENSCSAVP00000002142	ENSCSAVP00000005087	Uncharacterized protein.	eRF1_1 domain-containing protein.	0.467
H2Y9Z4_CIOSA	H2YKJ1_CIOSA	ENSCSAVP00000002142	ENSCSAVP00000005843	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.794
H2Y9Z4_CIOSA	H2YYU2_CIOSA	ENSCSAVP00000002142	ENSCSAVP00000010503	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.629
H2Y9Z4_CIOSA	H2ZMF6_CIOSA	ENSCSAVP00000002142	ENSCSAVP00000018772	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.470
H2YE41_CIOSA	H2YEB6_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000003664	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Uncharacterized protein.	0.954
H2YE41_CIOSA	H2YIB5_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000005064	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
H2YE41_CIOSA	H2YID8_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000005087	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	eRF1_1 domain-containing protein.	0.686
H2YE41_CIOSA	H2YKJ1_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000005843	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.988
H2YE41_CIOSA	H2Z022_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000010934	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
H2YE41_CIOSA	H2Z1Q7_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000011519	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
H2YE41_CIOSA	H2Z9Z1_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000014406	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	SUI1 domain-containing protein.	0.989
H2YE41_CIOSA	H2ZMF6_CIOSA	ENSCSAVP00000003589	ENSCSAVP00000018772	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	WD_REPEATS_REGION domain-containing protein.	0.959
H2YEB6_CIOSA	H2Y9Z4_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000002142	Uncharacterized protein.	Uncharacterized protein.	0.958
H2YEB6_CIOSA	H2YE41_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000003589	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.954
H2YEB6_CIOSA	H2YIB5_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000005064	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.980
H2YEB6_CIOSA	H2YID8_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000005087	Uncharacterized protein.	eRF1_1 domain-containing protein.	0.996
H2YEB6_CIOSA	H2YKJ1_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000005843	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.955
H2YEB6_CIOSA	H2YYU2_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000010503	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.956
H2YEB6_CIOSA	H2Z022_CIOSA	ENSCSAVP00000003664	ENSCSAVP00000010934	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.963