STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YHJ3_CIOSAHomeobox domain-containing protein. (594 aa)    
Predicted Functional Partners:
H2Y8R0_CIOSA
TTKRSYEDQ domain-containing protein.
    
   0.891
H2Z6I8_CIOSA
Uncharacterized protein.
    
   0.891
H2ZCL0_CIOSA
Uncharacterized protein.
    
   0.891
H2ZLS4_CIOSA
Uncharacterized protein.
    
   0.891
H2Y7U7_CIOSA
Uncharacterized protein.
    
 
 0.488
H2YL30_CIOSA
Uncharacterized protein.
    
 
 0.488
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.