STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatBaspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (483 aa)    
Predicted Functional Partners:
gatC
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
 0.999
gatA
Amidase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
 
 0.999
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
 0.995
glnS
glutaminyl-tRNA synthetase; Psort-B: Cytoplasmic, score:9.98; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; HMMPfam:IPR000924; HMMPanther:IPR000924; HMMPanther:IPR004514; HMMTigr:IPR004514; ScanRegExp:IPR001412; superfamily:IPR011035; K01886 glutaminyl-tRNA synthetase.
 
 0.989
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.929
pheT
phenylalanyl-tRNA synthetase; Psort-B: Cytoplasmic, score:9.98; COG0073 EMAP domain; HMMPfam:IPR002547; HMMPfam:IPR005121; HMMPfam:IPR005146; HMMPfam:IPR005147; Gene3D:IPR005121; Gene3D:IPR005147; Gene3D:IPR012340; HMMTigr:IPR004532; superfamily:IPR005121; superfamily:IPR009061; K01888 phenylalanyl-tRNA synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.811
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
  
 0.677
ACR71465.1
Glycoside Hydrolase Family 28-like polygalacturonase; Psort-B: Extracellular, score:8.10; COG5434 Endopolygalacturonase; HMMPfam:IPR000743; Gene3D:IPR012334; ScanRegExp:IPR000743; superfamily:IPR011050; Belongs to the glycosyl hydrolase 28 family.
       0.664
rpmC
Hypothetical protein; Psort-B: Unknown cell location; COG0255 Ribosomal protein L29; HMMPfam:IPR001854; Gene3D:IPR001854; HMMTigr:IPR001854; ScanRegExp:IPR001854; superfamily:IPR001854; Belongs to the universal ribosomal protein uL29 family.
   
    0.619
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.606
Your Current Organism:
Eubacterium eligens
NCBI taxonomy Id: 515620
Other names: Eubacterium eligens ATCC 27750, [. eligens ATCC 27750, [Eubacterium] eligens ATCC 27750
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