STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysScysteinyl-tRNA synthetase; Psort-B: Cytoplasmic, score:9.98; COG0215 Cysteinyl-tRNA synthetase; HMMPfam:IPR015273; HMMPfam:IPR015803; Gene3D:IPR014729; HMMPanther:IPR015804; HMMTigr:IPR002308; superfamily:IPR009080; K01883 cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (472 aa)    
Predicted Functional Partners:
ACR71503.1
Psort-B: Cytoplasmic, score:9.98; COG1045 Serine acetyltransferase; HMMTigr:IPR005881; superfamily:IPR011004; K00640 serine O-acetyltransferase.
 
  
 0.993
mrnC
Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
  
 0.967
ACR71506.1
RNA methyltransferase, TrmH family; Psort-B: Cytoplasmic, score:8.87; COG0566 rRNA methylases; HMMPfam:IPR001537; HMMPfam:IPR013123; BlastProDom:IPR001537; HMMTigr:IPR004441; K03218 RNA methyltransferase, TrmH family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.921
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.758
ACR71760.1
Cysteine synthase; Psort-B: Cytoplasmic, score:8.87; COG0031 Cysteine synthase; HMMPfam:IPR001926; HMMTigr:IPR005856; HMMTigr:IPR005859; ScanRegExp:IPR001216; K01738 cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.749
leuS
leucyl-tRNA synthetase; Psort-B: Cytoplasmic, score:9.98; COG0495 Leucyl-tRNA synthetase; HMMPfam:IPR002300; HMMPfam:IPR013155; Gene3D:IPR014729; HMMPanther:IPR002302; HMMTigr:IPR002302; ScanRegExp:IPR001412; superfamily:IPR009008; superfamily:IPR009080; K01869 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.744
ACR71085.1
Cysteine synthase; Psort-B: Cytoplasmic, score:8.87; COG0031 Cysteine synthase; HMMPfam:IPR001926; HMMTigr:IPR005856; HMMTigr:IPR005859; ScanRegExp:IPR001216; K01738 cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.736
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.736
pheT
phenylalanyl-tRNA synthetase; Psort-B: Cytoplasmic, score:9.98; COG0073 EMAP domain; HMMPfam:IPR002547; HMMPfam:IPR005121; HMMPfam:IPR005146; HMMPfam:IPR005147; Gene3D:IPR005121; Gene3D:IPR005147; Gene3D:IPR012340; HMMTigr:IPR004532; superfamily:IPR005121; superfamily:IPR009061; K01888 phenylalanyl-tRNA synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.732
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.729
Your Current Organism:
Eubacterium eligens
NCBI taxonomy Id: 515620
Other names: Eubacterium eligens ATCC 27750, [. eligens ATCC 27750, [Eubacterium] eligens ATCC 27750
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