STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase Icd; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (401 aa)    
Predicted Functional Partners:
acnA
Aconitate hydratase AcnA.
  
 0.994
bpr_I2129
Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.953
citZ
Citrate synthase citZ.
  
 
 0.943
gltB
Glutamate synthase large subunit GltB.
    
 0.942
bpr_I2631
Aspartate/tyrosine/aromatic aminotransferase.
  
 0.852
argH
Argininosuccinate lyase ArgH.
     
 0.835
purB
Adenylosuccinate lyase PurB; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.830
gltD
Glutamate synthase small subunit GltD.
     
 0.809
gltA1
NADPH-dependent glutamate synthase GltA1.
     
 0.809
gltA3
NADPH-dependent glutamate synthase GltA3.
     
 0.809
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.