STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgl28BPolygalacturonase Pgl28B; Belongs to the glycosyl hydrolase 28 family. (519 aa)    
Predicted Functional Partners:
est12C
Carbohydrate esterase family 12 Est12C.
 
 0.953
gh105B
Unsaturated rhamnogalacturonyl hydrolase Gh105B.
     0.826
pme8A
Pectin methylesterase Pme8A.
 
   
 0.795
est12A
Carbohydrate esterase family 12 Est12A.
 
 
 0.793
pme8B
Pectin methylesterase Pme8B.
  
 0.726
gh105A
Unsaturated rhamnogalacturonyl hydrolase Gh105A.
 
     0.719
xsa43C
Xylosidase/arabinofuranosidase Xsa43C; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.718
gh105C
Unsaturated rhamnogalacturonyl hydrolase Gh105C.
 
     0.650
est12B
Carbohydrate esterase family 12 Est12B.
 
 
 0.631
bpr_I0174
Acetyl-xylan esterase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.618
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.