STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtur_1353Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dth:DICTH_1239 pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family. (370 aa)    
Predicted Functional Partners:
Dtur_0890
KEGG: dth:DICTH_0737 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.974
Dtur_0576
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dth:DICTH_0431 oxidoreductase, Gfo/Idh/MocA family/transferase hexapeptide repeat protein.
  
 0.965
Dtur_0826
PFAM: oxidoreductase domain protein; KEGG: dth:DICTH_0668 oxidoreductase, Gfo/Idh/MocA family.
  
 0.897
Dtur_1352
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dth:DICTH_1238 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.829
Dtur_1354
PFAM: lipopolysaccharide biosynthesis protein; KEGG: dth:DICTH_1240 lipopolysaccharide biosynthesis.
     
 0.794
Dtur_1355
TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: dth:DICTH_1241 acetylglutamate kinase.
  
    0.750
Dtur_1356
MglA protein; KEGG: dth:DICTH_1242 MglA protein.
       0.737
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.701
Dtur_1427
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: dth:DICTH_1322 mannose-1-phosphate guanyltransferase.
  
  
 0.681
Dtur_1357
PFAM: Roadblock/LC7 family protein; KEGG: dth:DICTH_1243 MglB protein.
       0.650
Your Current Organism:
Dictyoglomus turgidum
NCBI taxonomy Id: 515635
Other names: D. turgidum DSM 6724, Dictyoglomus turgidum DSM 6724, Dictyoglomus turgidum str. DSM 6724, Dictyoglomus turgidum strain DSM 6724
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