STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAGlycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (488 aa)    
Predicted Functional Partners:
Cpar_1525
KEGG: cte:CT1596 glycogen phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
 
  
 0.939
glgE
Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
  
 
 0.933
Cpar_1960
KEGG: cte:CT2088 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
  
 0.868
Cpar_0228
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cte:CT2011 histidinol phosphatase-related protein, putative.
     
 0.797
Cpar_1733
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT0304 alpha-amylase family protein.
 
  
 0.710
Cpar_0229
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.690
Cpar_1694
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT0340 alpha-amylase family protein.
  
 0.634
Cpar_0232
PFAM: ROK family protein; KEGG: cte:CT2007 glucokinase, putative.
     
 0.630
Cpar_1097
PFAM: iron-containing alcohol dehydrogenase; KEGG: cte:CT1152 alcohol dehydrogenase, iron-containing.
   
    0.629
Cpar_1168
PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cte:CT0951 alcohol dehydrogenase, iron-containing.
   
    0.629
Your Current Organism:
Chlorobaculum parvum
NCBI taxonomy Id: 517417
Other names: C. parvum NCIB 8327, Chlorobaculum parvum NCIB 8327, Chlorobaculum parvum str. NCIB 8327, Chlorobaculum parvum strain NCIB 8327
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