STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpar_0434PFAM: ribulose bisphosphate carboxylase large chain; KEGG: cte:CT1772 ribulose-bisphosphate carboxylase large chain. (434 aa)    
Predicted Functional Partners:
Cpar_0484
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1708 hydrolase, haloacid dehalogenase-like family.
     
 0.906
Cpar_0911
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0889 phosphoglycolate phosphatase.
     
 0.906
Cpar_1209
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1.
     
 0.906
Cpar_0303
KEGG: cte:CT1899 acetyltransferase, CysE/LacA/LpxA/NodL family.
    
 
 0.830
Cpar_1567
PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT1475 transporter, putative.
  
     0.723
Cpar_0511
KEGG: cte:CT1678 hypothetical protein.
  
     0.675
Cpar_0435
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1771 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.627
Cpar_0436
KEGG: cte:CT1770 hypothetical protein.
       0.627
pgk
PFAM: phosphoglycerate kinase; KEGG: cte:CT2222 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.581
Cpar_0304
PFAM: FAD dependent oxidoreductase; KEGG: cte:CT1898 protoporphyrinogen oxidase, putative.
  
     0.580
Your Current Organism:
Chlorobaculum parvum
NCBI taxonomy Id: 517417
Other names: C. parvum NCIB 8327, Chlorobaculum parvum NCIB 8327, Chlorobaculum parvum str. NCIB 8327, Chlorobaculum parvum strain NCIB 8327
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